| |
original article |
Date |
Title |
Authors Max. 6 Authors |
| 1 |
[GO] |
2026―Jun―03 |
From Bench to Insight: Rapid Pathogen Genomic Surveillance Workflow for SARS-CoV-2 and Emerging Pathogens |
Chelsea Zimmer, Selena McVay, Keely Starke, Kimily Hughley, Sara N. Koenig, Venkat Sundar Gadepalli |
| 2 |
[GO] |
2026―Apr―22 |
Differential Gene Expression in Human Upper Respiratory Tract Samples Identifies Antiviral Responses in Omicron SARS-CoV-2 Infection |
Andrea E. Luquette, Anthony Cicalo, Maren C. Fitzpatrick, Ghyssella E. Valdiviezo, J. Alexander Chitty, Gregory K. Rice, Regina Z. Cer, Cameron V. Sayer, Francisco Malagon, Kimberly A. Bishop-Lilly |
| 3 |
[GO] |
2026―Jan―28 |
Genetically Shared Signatures Between COVID-19 and Cancer Identified Through In Silico Case-Control Analysis |
Ammar Yasir Ahmed Ahmed, Sevinç Akçay |
| 4 |
[GO] |
2025―Dec―31 |
circRNA Signatures Distinguishing COVID-19 Outcomes and Acute Respiratory Distress Syndrome: A Longitudinal, Two-Timepoint, Precision-Weighted Analysis of a Public RNA-Seq Cohort |
Alawi Habara |
| 5 |
[GO] |
2025―Nov―11 |
Genomic Characterization of Predominant Delta Variant (B.1.617.2 and AY.120 Sub-Lineages) SARS-CoV-2 Detected from AFI Patients in Ethiopia During 2021-2022 |
Musse Tadesse Chekol, Dejenie Shiferaw Teklu, Adamu Tayachew, Wolde Shura, Admikew Agune, Aster Hailemariam, Aynalem Alemu, Mesfin Wossen, Abdulhafiz Hassen, Melaku Gonta, Neamin Tesfay, Tesfu Kasa, Nigatu Kebede |
| 6 |
[GO] |
2025―Oct―20 |
SARS-CoV-2 Infection of Lung Epithelia Leads to an Increase in the Cleavage and Translocation of RNase-III Drosha; Loss of Drosha Is Associated with a Decrease in Viral Replication |
Michael T. Winters, Emily S. Westemeier-Rice, Travis W. Rawson, Kiran J. Patel, Gabriel M. Sankey, Maya Dixon-Gross, Olivia R. McHugh, Nasrin Hashemipour, McKenna L. Carroll, Isabella R. Wilkerson, Ivan Martinez |
| 7 |
[GO] |
2025―Oct―13 |
Genetic Variability in NKG2 Receptors and Their Ligands: Associations with SARS-CoV-2 Infection and COVID-19 Severity |
Jagoda Siemaszko, Katarzyna Grad, Jerzy Świerkot, Katarzyna Bogunia-Kubik |
| 8 |
[GO] |
2025―Aug―29 |
Association Between Single-Nucleotide Polymorphism rs2287886 of CD209 Gene and Clinical Severity of COVID-19 in Unvaccinated Brazilian Patients |
Steffany Larissa Galdino Galisa, Raldney Ricardo Costa da Silva, Mell Cunha Aguiar, Marcus Villander Barros de Oliveira Sá, João Vinícius de Oliveira Melo, Giúlia Vitória Neves Pereira, José Rodolfo de Lima e Silva, Bianca de Lima Xavier Paiva, Andreza Gabriele da Silva Henrique, Rodrigo Feliciano do Carmo, Carlos Dornels Freire de Souza, Anderson da Costa Armstrong, Pablo Rafael Silveira Oliveira, Luydson Richardson Silva Vasconcelos |
| 9 |
[GO] |
2025―Aug―07 |
Genetic Evidence of Yersinia pestis from the First Pandemic |
Swamy R. Adapa, Karen Hendrix, Aditya Upadhyay, Subhajeet Dutta, Andrea Vianello, Gregory O’Corry-Crowe, Jorge Monroy, Tatiana Ferrer, Elizabeth Remily-Wood, Gloria C. Ferreira, Michael Decker, Robert H. Tykot, Sucheta Tripathy, Rays H. Y. Jiang |
| 10 |
[GO] |
2025―Apr―29 |
Recombination and Genetic Diversity Analysis of Porcine Reproductive and Respiratory Syndrome 1 Nonstructural Protein 2 Genes in China |
Chen Lv, Baoyi Guan, Jiankun Pang, Weili Kong, Ruining Wang, Lin Wang, Mengmeng Zhao, Hang Zhang |
| 11 |
[GO] |
2025―Mar―18 |
SARS-CoV-2 Genetic Variants Identified in Selected Regions of Ethiopia Through Whole Genome Sequencing: Insights from the Fifth Wave of COVID-19 |
Getnet Hailu, Mengistu Legesse, Andargachew Mulu, Girmay Medhin, Mesfin Mengesha Tsegaye, Dawit Hailu Alemayehu, Abaysew Ayele, Atsbeha Gebreegziabxier, Adamu Tayachew, Adimkewu Aguine, Haileyesus Dejene, Sofonias K. Tessema, Harris Onywera, Assohoun Egomli Stanislas, Ebba Abate, Alessandro Marcello, Molalegne Bitew |
| 12 |
[GO] |
2024―Nov―14 |
Dynamics of SARS-CoV-2 Spike RBD Protein Mutation and Pathogenicity Consequences in Indonesian Circulating Variants in 2020-2022 |
Nabiel Muhammad Haykal, Fadilah Fadilah, Beti Ernawati Dewi, Linda Erlina, Aisyah Fitriannisa Prawiningrum, Badriul Hegar |
| 13 |
[GO] |
2024―Oct―22 |
The Chilean COVID-19 Genomics Network Biorepository: A Resource for Multi-Omics Studies of COVID-19 and Long COVID in a Latin American Population |
Iskra A. Signore, Gerardo Donoso, Pamela Bocchieri, Eduardo A. Tobar-Calfucoy, Cristian E. Yáñez, Laura Carvajal-Silva, Andrea X. Silva, Carola Otth, Claudio Cappelli, Héctor Valenzuela Jorquera, Daniela Zapata-Contreras, Yolanda Espinosa-Parrilla, Paula Zúñiga-Pacheco, Macarena Fuentes-Guajardo, Virginia A. Monardes-Ramírez, Pia Kochifas Velasquez, Christian A. Muñoz, Cristina Dorador, Jonathan García-Araya, Claudia P. Campillay-Véliz, Cesar Echeverria, Rodolfo Alejandro Santander, Leslie C. Cerpa, Matías F. Martínez, Luis Abel Quiñones, Eduardo Roberto Lamoza Galleguillos, Juan Saez Hidalgo, Estefanía Nova-Lamperti, Sergio Sanhueza, Annesi Giacaman, Gerardo Acosta-Jamett, Cristóbal Verdugo, Anita Plaza, Claudio Verdugo, Carolina Selman, Ricardo Alejandro Verdugo, Alicia Colombo |
| 14 |
[GO] |
2024―Oct―14 |
Cross-Species Susceptibility of Emerging Variants of SARS-CoV-2 Spike |
Meng Li, Fei Lv, Zihao Li, Chenyu Zhao, Xiao Wang, Pingfen Zhu, Xuming Zhou |
| 15 |
[GO] |
2024―Jul―08 |
Pathway-Based Mendelian Randomization for Pre-Infection IL-6 Levels Highlights Its Role in Coronavirus Disease |
Zoha Kamali, Nafiseh Esmaeil, Chris H. L. Thio, Ahmad Vaez, Harold Snieder |
| 16 |
[GO] |
2024―Jul―03 |
SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response |
Nikita Sitharam, Houriiyah Tegally, Danilo de Castro Silva, Cheryl Baxter, Tulio de Oliveira, Joicymara S. Xavier |
| 17 |
[GO] |
2024―Apr―22 |
HLA-B and C Expression Contributes to COVID-19 Disease Severity within a South African Cohort |
Lisa Naidoo, Thilona Arumugam, Veron Ramsuran |
| 18 |
[GO] |
2024―Mar―14 |
Genomic Characterization of SARS-CoV-2 Variants from Clinical Isolates during the COVID-19 Epidemic in Mauritania |
Jemila Deida, Nasserdine Papa Mze, Mamadou Beye, Sidi Mohamed Ahmed, Ahmed El Bara, Mohamed Abdallahi Bollahi, Leonardo Basco, Ali Ould Mohamed Salem Boukhary, Pierre-Edouard Fournier |
| 19 |
[GO] |
2023―Oct―05 |
Analysis of Epidemiological Factors and SNP rs3804100 of TLR2 for COVID-19 in a Cohort of Professionals Who Worked in the First Pandemic Wave in Belém-PA, Brazil |
Marcos Jessé Abrahão Silva, Caroliny Soares Silva, Rebecca Lobato Marinho, Jeanne Gonçalves Cabral, Ellen Polyana da Costa Gurrão, Pabllo Antonny Silva dos Santos, Samir Mansour Moraes Casseb, Karla Valéria Batista Lima, Luana Nepomuceno Gondim Costa Lima |
| 20 |
[GO] |
2023―Sep―24 |
Molecular Characterization of Complete Genome Sequence of an Avian Coronavirus Identified in a Backyard Chicken from Tanzania |
Henry M. Kariithi, Jeremy D. Volkening, Gaspar H. Chiwanga, Iryna V. Goraichuk, Peter L. M. Msoffe, David L. Suarez |
| 21 |
[GO] |
2023―Sep―14 |
Polymorphisms within the SARS-CoV-2 Human Receptor Genes Associate with Variable Disease Outcomes across Ethnicities |
Theolan Adimulam, Thilona Arumugam, Anushka Naidoo, Kogieleum Naidoo, Veron Ramsuran |
| 22 |
[GO] |
2023―Aug―29 |
Gene Polymorphisms of Epithelial Cell-Derived Alarmins and Their Effects on Protein Levels and Disease Severity in Patients with COVID-19 |
Maral Ranjbar, Ruth P. Cusack, Christiane E. Whetstone, Shiraz Nawaz, Christopher Khoury, Jennifer Wattie, Lesley Wiltshire, Jennifer Le Roux, Eric Cheng, Thivya Srinathan, Terence Ho, Roma Sehmi, MyLinh Duong, Gail M. Gauvreau |
| 23 |
[GO] |
2023―Aug―28 |
Identifying Innate Resistance Hotspots for SARS-CoV-2 Antivirals Using In Silico Protein Techniques |
Stephanie Portelli, Ruby Heaton, David B. Ascher |
| 24 |
[GO] |
2023―Jul―13 |
Variations in NSP1 of Porcine Reproductive and Respiratory Syndrome Virus Isolated in China from 1996 to 2022 |
Zhiqing Zhang, Hang Zhang, Qin Luo, Yajie Zheng, Weili Kong, Liangzong Huang, Mengmeng Zhao |
| 25 |
[GO] |
2023―Jul―11 |
Apolipoprotein E (ApoE) ε4 Genotype (ApoE rs429358-ApoE rs7412 Polymorphisms) Is Not Associated with Long COVID Symptoms in Previously Hospitalized COVID-19 Survivors |
César Fernández-de-las-Peñas, Lars Arendt-Nielsen, Gema Díaz-Gil, Francisco Gómez-Esquer, Antonio Gil-Crujera, Stella M. Gómez-Sánchez, Silvia Ambite-Quesada, María A. Palomar-Gallego, Oscar J. Pellicer-Valero, Rocco Giordano |
| 26 |
[GO] |
2023―Jun―27 |
In Vitro Analysis of the Effect of SARS-CoV-2 Non-VOC and four Variants of Concern on MHC-Class-I Expression on Calu-3 and Caco-2 Cells |
Nora A. Bahlmann, Lena Mautner, Mona Hoyos, Erwan Sallard, Carola Berger, Alexandra Dangel, Franziska Jönsson, Johannes C. Fischer, Florian Kreppel, Wenli Zhang, Irene Esposito, Edwin Bölke, Armin Baiker, Anja Ehrhardt |
| 27 |
[GO] |
2023―Jun―13 |
Non-Pharmaceutical Interventions against COVID-19 Causing a Lower Trend in Age of LHON Onset |
Yuxi Zheng, Xiaoyun Jia, Shiqiang Li, Xueshan Xiao, Qingjiong Zhang, Panfeng Wang |
| 28 |
[GO] |
2023―Jun―02 |
Development and Application of Real-Time PCR-Based Screening for Identification of Omicron SARS-CoV-2 Variant Sublineages |
Anna Esman, Dmitry Dubodelov, Kamil Khafizov, Ivan Kotov, German Roev, Anna Golubeva, Gasan Gasanov, Marina Korabelnikova, Askar Turashev, Evgeniy Cherkashin, Konstantin Mironov, Anna Cherkashina, Vasily Akimkin |
| 29 |
[GO] |
2023―Mar―13 |
Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020-2022 |
Abay Sisay, Derek Tshiabuila, Stephanie van Wyk, Abraham Tesfaye, Gerald Mboowa, Samuel O. Oyola, Sofonias Kifle Tesema, Cheryl Baxter, Darren Martin, Richard Lessells, Houriiyah Tegally, Monika Moir, Jennifer Giandhari, Sureshnee Pillay, Lavanya Singh, Yajna Ramphal, Arisha Maharaj, Yusasha Pillay, Akhil Maharaj, Yeshnee Naidoo, Upasana Ramphal, Lucious Chabuka, Eduan Wilkinson, Tulio de Oliveira, Adey Feleke Desta, James E. San |
| 30 |
[GO] |
2023―Mar―10 |
High Throughput SARS-CoV-2 Genome Sequencing from 384 Respiratory Samples Using the Illumina COVIDSeq Protocol |
Nasserdine Papa Mze, Idir Kacel, Mamadou Beye, Raphael Tola, Mariéma Sarr, Leonardo Basco, Hervé Bogreau, Philippe Colson, Pierre-Edouard Fournier |
| 31 |
[GO] |
2023―Mar―06 |
Role of Genetic Thrombophilia Markers in Thrombosis Events in Elderly Patients with COVID-19 |
Irina Fevraleva, Daria Mamchich, Dmitriy Vinogradov, Yulia Chabaeva, Sergey Kulikov, Tatiana Makarik, Vahe Margaryan, Georgiy Manasyan, Veronika Novikova, Svetlana Rachina, Georgiy Melkonyan, Karine Lytkina |
| 32 |
[GO] |
2023―Mar―01 |
Missense Variants of von Willebrand Factor in the Background of COVID-19 Associated Coagulopathy |
Zsuzsanna Elek, Eszter Losoncz, Katalin Maricza, Zoltán Fülep, Zsófia Bánlaki, Réka Kovács-Nagy, Gergely Keszler, Zsolt Rónai |
| 33 |
[GO] |
2023―Feb―06 |
Molecular Evolution of SARS-CoV-2 during the COVID-19 Pandemic |
Luis Daniel González-Vázquez, Miguel Arenas |
| 34 |
[GO] |
2023―Jan―25 |
Association of CYP24A1 Gene rs6127099 (A > T) Polymorphism with Lower Risk to COVID-19 Infection in Kazakhstan |
Antonio Sarría-Santamera, Kymbat Mukhtarova, Ardak Baizhaxynova, Kaznagul Kanatova, Saule Zhumambayeva, Ainur Akilzhanova, Azliyati Azizan |
| 35 |
[GO] |
2023―Jan―16 |
Clinical Evaluation of BioFire COVID-19 Test, BioFire Respiratory Panel 2.1, and Cepheid Xpert Xpress SARS-CoV-2 Assays for Sample-to-Answer Detection of SARS-CoV-2 |
Joonhong Park, So Yeon Kim, Jaehyeon Lee, Ki Ho Hong |
| 36 |
[GO] |
2023―Jan―09 |
SARS-CoV-2 Omicron Variant Genomic and Phylogenetic Analysis in Iraqi Kurdistan Region |
Sevan Omer Majed, Suhad Asad Mustafa, Paywast Jamal Jalal, Mohammed Hassan Fatah, Monika Miasko, Zanko Jawhar, Abdulkarim Yasin Karim |
| 37 |
[GO] |
2023―Jan―06 |
Genomic Analysis of Non-B Nucleic Acids Structures in SARS-CoV-2: Potential Key Roles for These Structures in Mutability, Translation, and Replication? |
Stefan Bidula, Václav Brázda |
| 38 |
[GO] |
2022―Dec―28 |
Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments |
Craig Westover, Savlatjon Rahmatulloev, David Danko, Evan E. Afshin, Niamh B. O’Hara, Rachid Ounit, Daniela Bezdan, Christopher E. Mason |
| 39 |
[GO] |
2022―Dec―23 |
Polymorphisms in ACE1, TMPRSS2, IFIH1, IFNAR2, and TYK2 Genes Are Associated with Worse Clinical Outcomes in COVID-19 |
Cristine Dieter, Leticia de Almeida Brondani, Natália Emerim Lemos, Ariell Freires Schaeffer, Caroline Zanotto, Denise Taurino Ramos, Eliandra Girardi, Felipe Mateus Pellenz, Joiza Lins Camargo, Karla Suzana Moresco, Lucas Lima da Silva, Mariana Rauback Aubin, Mayara Souza de Oliveira, Tatiana Helena Rech, Luís Henrique Canani, Fernando Gerchman, Cristiane Bauermann Leitão, Daisy Crispim |
| 40 |
[GO] |
2022―Dec―23 |
Severe COVID-19 May Impact Hepatic Fibrosis /Hepatic Stellate Cells Activation as Indicated by a Pathway and Population Genetic Study |
Leire Moya, Samaneh Farashi, Prashanth Suravajhala, Panchadsaram Janaththani, Jyotsna Batra |
| 41 |
[GO] |
2022―Dec―19 |
Real-Time Polymerase Chain Reaction: Current Techniques, Applications, and Role in COVID-19 Diagnosis |
I Made Artika, Yora Permata Dewi, Ita Margaretha Nainggolan, Josephine Elizabeth Siregar, Ungke Antonjaya |
| 42 |
[GO] |
2022―Dec―19 |
In Silico Prediction of Hub Genes Involved in Diabetic Kidney and COVID-19 Related Disease by Differential Gene Expression and Interactome Analysis |
Ulises Osuna-Martinez, Katia Aviña-Padilla, Vicente Olimon-Andalon, Carla Angulo-Rojo, Alma Guadron-Llanos, Jose Carlos Rivas-Ferreira, Francisco Urrea, Loranda Calderon-Zamora |
| 43 |
[GO] |
2022―Dec―14 |
Genetic Variants and Protective Immunity against SARS-CoV-2 |
Ali A. Rabaan, Abbas Al Mutair, Mohammed Aljeldah, Basim R. Al Shammari, Tarek Sulaiman, Abeer N. Alshukairi, Mubarak Alfaresi, Jumana M. Al-Jishi, Neda A. Al Bati, Maha A. Al-Mozaini, Ali Al Bshabshe, Jenan A. Almatouq, Abdulmonem A. Abuzaid, Amal H. Alfaraj, Wasl Al-Adsani, Mohammed Alabdullah, Sara Alwarthan, Fatimah Alsalman, Ameen S. S. Alwashmi, Saad Alhumaid |
| 44 |
[GO] |
2022―Dec―13 |
Evaluating the Role of BglI rs739837 and TaqI rs731236 Polymorphisms in Vitamin D Receptor with SARS-CoV-2 Variants Mortality Rate |
Wisam Hasan Madhloom Albu-Mohammed, Enayat Anvari, Abolfazl Fateh |
| 45 |
[GO] |
2022―Dec―07 |
Ontological Analysis of Coronavirus Associated Human Genes at the COVID-19 Disease Portal |
Shur-Jen Wang, Kent C. Brodie, Jeffrey L. De Pons, Wendy M. Demos, Adam C. Gibson, G. Thomas Hayman, Morgan L. Hill, Mary L. Kaldunski, Logan Lamers, Stanley J. F. Laulederkind, Harika S. Nalabolu, Jyothi Thota, Ketaki Thorat, Marek A. Tutaj, Monika Tutaj, Mahima Vedi, Stacy Zacher, Jennifer R. Smith, Melinda R. Dwinell, Anne E. Kwitek |
| 46 |
[GO] |
2022―Dec―01 |
Characterizing Macrophages Diversity in COVID-19 Patients Using Deep Learning |
Mario A. Flores, Karla Paniagua, Wenjian Huang, Ricardo Ramirez, Leonardo Falcon, Andy Liu, Yidong Chen, Yufei Huang, Yufang Jin |
| 47 |
[GO] |
2022―Nov―18 |
Anticipating the Next Chess Move: Blocking SARS-CoV-2 Replication and Simultaneously Disarming Viral Escape Mechanisms |
Samir Mansour Moraes Casseb, André Salim Khayat, Jorge Estefano Santana de Souza, Edivaldo Herculano Correa de Oliveira, Sidney Emanuel Batista Dos Santos, Pedro Fernando da Costa Vasconcelos, Paulo Pimentel de Assumpção |
| 48 |
[GO] |
2022―Oct―30 |
Membrane Clustering of Coronavirus Variants Using Document Similarity |
Péter Lehotay-Kéry, Attila Kiss |
| 49 |
[GO] |
2022―Oct―24 |
Genetic Association between ACE2 (rs2285666 and rs2074192) and TMPRSS2 (rs12329760 and rs2070788) Polymorphisms with Post-COVID Symptoms in Previously Hospitalized COVID-19 Survivors |
César Fernández-de-las-Peñas, Lars Arendt-Nielsen, Gema Díaz-Gil, Francisco Gómez-Esquer, Antonio Gil-Crujera, Stella M. Gómez-Sánchez, Silvia Ambite-Quesada, María A. Palomar-Gallego, Oscar J. Pellicer-Valero, Rocco Giordano |
| 50 |
[GO] |
2022―Oct―19 |
Host Genetic Risk Factors Associated with COVID-19 Susceptibility and Severity in Vietnam |
Vu Phuong Nhung, Nguyen Dang Ton, Tran Thi Bich Ngoc, Ma Thi Huyen Thuong, Nguyen Thi Thanh Hai, Kim Thi Phuong Oanh, Le Thi Thu Hien, Pham Ngoc Thach, Nong Van Hai, Nguyen Hai Ha |
| 51 |
[GO] |
2022―Sep―19 |
The Impact of the COVID-19 Pandemic on School-Aged Children with Fragile X Syndrome |
Hailey Silver, Hilary Rosselot, Rebecca Shaffer, Reymundo Lozano |
| 52 |
[GO] |
2022―Sep―15 |
Simultaneous SARS-CoV-2 Genome Sequencing of 384 Samples on an Illumina MiSeq Instrument through Protocol Optimization |
Nasserdine Papa Mze, Mamadou Beye, Idir Kacel, Raphael Tola, Leonardo Basco, Hervé Bogreau, Philippe Colson, Pierre-Edouard Fournier |
| 53 |
[GO] |
2022―Sep―08 |
A Novel 3-Gene Signature for Identifying COVID-19 Patients Based on Bioinformatics and Machine Learning |
Guichuan Lai, Hui Liu, Jielian Deng, Kangjie Li, Biao Xie |
| 54 |
[GO] |
2022―Jul―27 |
Are Pain Polymorphisms Associated with the Risk and Phenotype of Post-COVID Pain in Previously Hospitalized COVID-19 Survivors? |
César Fernández-de-las-Peñas, Rocco Giordano, Gema Díaz-Gil, Antonio Gil-Crujera, Stella M. Gómez-Sánchez, Silvia Ambite-Quesada, Lars Arendt-Nielsen |
| 55 |
[GO] |
2022―Jul―27 |
A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains |
Stefanus Bernard, Hendra Wibawa, Mohamad Saifudin Hakim, Arli Aditya Parikesit, Chandra Kusuma Dewa, Yasubumi Sakakibara |
| 56 |
[GO] |
2022―Jul―07 |
Drug-Target Network Study Reveals the Core Target-Protein Interactions of Various COVID-19 Treatments |
Yulin Dai, Hui Yu, Qiheng Yan, Bingrui Li, Andi Liu, Wendao Liu, Xiaoqian Jiang, Yejin Kim, Yan Guo, Zhongming Zhao |
| 57 |
[GO] |
2022―Jun―26 |
The Effect of Host miRNAs on Prognosis in COVID-19: miRNA-155 May Promote Severity via Targeting Suppressor of Cytokine Signaling 1 (SOCS1) Gene |
Asuman Gedikbasi, Gokhan Adas, Nilgun Isiksacan, Kadriye Kart Kart Yasar, Esra Canbolat Canbolat Unlu, Rabia Yilmaz, Gulsum Oya Hergunsel, Zafer Cukurova |
| 58 |
[GO] |
2022―Jun―22 |
The Role of ACE, ACE2, and AGTR2 Polymorphisms in COVID-19 Severity and the Presence of COVID-19-Related Retinopathy |
Kristina Jevnikar, Luka Lapajne, Daniel Petrovič, Andrej Meglič, Mateja Logar, Nataša Vidovič Valentinčič, Mojca Globočnik Petrovič, Ines Cilenšek, Polona Jaki Mekjavić |
| 59 |
[GO] |
2022―Jun―22 |
Identification of COVID-19-Associated DNA Methylation Variations by Integrating Methylation Array and scRNA-Seq Data at Cell-Type Resolution |
Guoliang Wang, Zhuang Xiong, Fei Yang, Xinchang Zheng, Wenting Zong, Rujiao Li, Yiming Bao |
| 60 |
[GO] |
2022―Apr―14 |
Robust Mutation Profiling of SARS-CoV-2 Variants from Multiple Raw Illumina Sequencing Data with Cloud Workflow |
Hendrick Gao-Min Lim, Shih-Hsin Hsiao, Yang C. Fann, Yuan-Chii Gladys Lee |
| 61 |
[GO] |
2022―Apr―13 |
COVID-19 and Molecular Genetics |
Giuseppe Novelli, Michela Biancolella |
| 62 |
[GO] |
2022―Apr―07 |
Using an Unsupervised Clustering Model to Detect the Early Spread of SARS-CoV-2 Worldwide |
Yawei Li, Qingyun Liu, Zexian Zeng, Yuan Luo |
| 63 |
[GO] |
2022―Mar―21 |
Identification of Genetic Risk Factors of Severe COVID-19 Using Extensive Phenotypic Data: A Proof-of-Concept Study in a Cohort of Russian Patients |
Sergey G. Shcherbak, Anton I. Changalidi, Yury A. Barbitoff, Anna Yu. Anisenkova, Sergei V. Mosenko, Zakhar P. Asaulenko, Victoria V. Tsay, Dmitrii E. Polev, Roman S. Kalinin, Yuri A. Eismont, Andrey S. Glotov, Evgeny Y. Garbuzov, Alexander N. Chernov, Olga A. Klitsenko, Mikhail O. Ushakov, Anton E. Shikov, Stanislav P. Urazov, Vladislav S. Baranov, Oleg S. Glotov |
| 64 |
[GO] |
2022―Mar―21 |
Coronavirus Genomes and Unique Mutations in Structural and Non-Structural Proteins in Pakistani SARS-CoV-2 Delta Variants during the Fourth Wave of the Pandemic |
Muhammad Zeeshan Anwar, Madeeha Shahzad Lodhi, Muhammad Tahir Khan, Malik Ihsanullah Khan, Sumaira Sharif |
| 65 |
[GO] |
2022―Feb―15 |
Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2 |
Ales Eichmeier, Tomas Kiss, Maria Kocanova, Eliska Hakalova, Milan Spetik, Jana Cechova, Boris Tichy |
| 66 |
[GO] |
2021―Dec―24 |
Detection of A-to-I RNA Editing in SARS-COV-2 |
Ernesto Picardi, Luigi Mansi, Graziano Pesole |
| 67 |
[GO] |
2021―Nov―23 |
Poking COVID-19: Insights on Genomic Constraints among Immune-Related Genes between Qatari and Italian Populations |
Hamdi Mbarek, Massimiliano Cocca, Yasser Al-Sarraj, Chadi Saad, Massimo Mezzavilla, Wadha AlMuftah, Dario Cocciadiferro, Antonio Novelli, Isabella Quinti, Azza AlTawashi, Salvino Salvaggio, Asma AlThani, Giuseppe Novelli, Said I. Ismail |
| 68 |
[GO] |
2021―Nov―16 |
Relative Consolidation of the Kappa Variant Pre-Dates the Massive Second Wave of COVID-19 in India |
Jitendra Singh, Anvita Gupta Malhotra, Debasis Biswas, Prem Shankar, Leena Lokhande, Ashvini Kumar Yadav, Arun Raghuvanshi, Dipesh Kale, Shashwati Nema, Saurabh Saigal, Sarman Singh |
| 69 |
[GO] |
2021―Nov―10 |
SARS-CoV-2 and Pre-Tamponade Pericardial Effusion. Could Sotos Syndrome Be a Major Risk Factor? |
Barbara Citoni, Maria Cristina Digilio, Rossella Capolino, Maria Giulia Gagliardi, Andrea Campana, Fabrizio Drago, Giulio Calcagni |
| 70 |
[GO] |
2021―Oct―04 |
COVID-19 Infection Alters the Microbiome: Elite Athletes and Sedentary Patients Have Similar Bacterial Flora |
Gergely Babszky, Ferenc Torma, Dora Aczel, Peter Bakonyi, Zoltan Gombos, Janos Feher, Dóra Szabó, Balázs Ligeti, Sándor Pongor, Laszlo Balogh, Anikó Pósa, Zsolt Radak |
| 71 |
[GO] |
2021―Oct―01 |
Angiotensin-Converting Enzyme (ACE) 1 Gene Polymorphism and Phenotypic Expression of COVID-19 Symptoms |
Naoki Yamamoto, Nao Nishida, Rain Yamamoto, Takashi Gojobori, Kunitada Shimotohno, Masashi Mizokami, Yasuo Ariumi |
| 72 |
[GO] |
2021―Sep―17 |
Different Strategies for the Identification of SARS-CoV-2 Variants in the Laboratory Practice |
Federico Anaclerio, Rossella Ferrante, Domitilla Mandatori, Ivana Antonucci, Matteo Capanna, Verena Damiani, Pamela Di Tomo, Roberto Ferrante, Marianna Ranaudo, Vincenzo De Laurenzi, Liborio Stuppia, Simone De Fabritiis |
| 73 |
[GO] |
2021―Aug―02 |
Methylation of Host Genes Associated with Coronavirus Infection from Birth of 26 Years |
Rutu Rathod, Aniruddha Rathod, Parnian Kheirkhah Rahimabad, Jiasong Duan, Hongmei Zhang, S. Hasan Arshad, Wilfred Karmaus |
| 74 |
[GO] |
2021―Jul―14 |
SARS-CoV-2 Infection and Emery-Dreifuss Syndrome in a Young Patient with a Family History of Dilated Cardiomyopathy |
Irina Magdalena Dumitru, Nicoleta Dorina Vlad, Sorin Rugina, Nicoleta Onofrei, Sabina Gherca, Marian Raduna, Aurel Trana, Mirela Dumitrascu, Elena Popovici, Mircea Bajdechi, Lucia Zekra, Roxana Carmen Cernat |
| 75 |
[GO] |
2021―Jul―13 |
Correlates of SARS-CoV-2 Variants on Deaths, Case Incidence and Case Fatality Ratio among the Continents for the Period of 1 December 2020 to 15 March 2021 |
Wajdy J. Al-Awaida, Baker Jawabrah Al Hourani, Samer Swedan, Refat Nimer, Foad Alzoughool, Hamzeh J. Al-Ameer, Sara E. Al Tamam, Raghad Alashqar, Omar Al bawareed, Yulia Gushchina, Mohamed Samy Abousenna, Amani Marwan Ayyash, Ahmad Sharab, Sulaiman M. Alnaimat, Amer Imraish, Muhanad W. Akash, Najah R. Hadi |
| 76 |
[GO] |
2021―Jul―06 |
Bioinformatics Analysis of Allele Frequencies and Expression Patterns of ACE2, TMPRSS2 and FURIN in Different Populations and Susceptibility to SARS-CoV-2 |
Mohammad Tarek, Hana Abdelzaher, Firas Kobeissy, Hassan A. N. El-Fawal, Mohammed M. Salama, Anwar Abdelnaser |
| 77 |
[GO] |
2021―Jun―29 |
Toward a Coronavirus Knowledge Graph |
Peng Zhang, Yi Bu, Peng Jiang, Xiaowen Shi, Bing Lun, Chongyan Chen, Arida Ferti Syafiandini, Ying Ding, Min Song |
| 78 |
[GO] |
2021―Jun―25 |
Uncovering Signals from the Coronavirus Genome |
Enrique Canessa |
| 79 |
[GO] |
2021―Jun―08 |
The TNFRSF13C H159Y Variant Is Associated with Severe COVID-19: A Retrospective Study of 500 Patients from Southern Italy |
Roberta Russo, Immacolata Andolfo, Vito Alessandro Lasorsa, Sueva Cantalupo, Roberta Marra, Giulia Frisso, Pasquale Abete, Gian Marco Cassese, Giuseppe Servillo, Gabriella Esposito, Ivan Gentile, Carmelo Piscopo, Matteo Della Monica, Giuseppe Fiorentino, Giuseppe Russo, Pellegrino Cerino, Carlo Buonerba, Biancamaria Pierri, Massimo Zollo, Achille Iolascon, Mario Capasso |
| 80 |
[GO] |
2021―May―28 |
Association between Interferon-Lambda-3 rs12979860, TLL1 rs17047200 and DDR1 rs4618569 Variant Polymorphisms with the Course and Outcome of SARS-CoV-2 Patients |
Sara H. A. Agwa, Marwa Mostafa Kamel, Hesham Elghazaly, Aya M. Abd Elsamee, Hala Hafez, Samia Abdo Girgis, Hoda Ezz Elarab, Fatma S. E. Ebeid, Safa Matbouly Sayed, Lina Sherif, Marwa Matboli |
| 81 |
[GO] |
2021―May―27 |
Mutational Asymmetries in the SARS-CoV-2 Genome May Lead to Increased Hydrophobicity of Virus Proteins |
Roman Matyášek, Kateřina Řehůřková, Kristýna Berta Marošiová, Aleš Kovařík |
| 82 |
[GO] |
2021―May―24 |
Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target |
Alina Renz , Lina Widerspick , Andreas Dräger |
| 83 |
[GO] |
2021―Apr―28 |
Evaluation of RT-qPCR and Loop-Mediated Isothermal Amplification (LAMP) Assays for the Detection of SARS-CoV-2 in Argentina |
María Dolores Fellner, Romina Bonaventura, Jorge Basiletti, Martín Avaro, Estefanía Benedetti, Ana Campos, María Elena Dattero, Mara Russo, Sara Vladmirsky, Viviana Molina, Lucía Irazu, Marcelo A. Rodriguez, Andrea Pontoriero, Daniel M. Cisterna, Elsa G. Baumeister |
| 84 |
[GO] |
2021―Apr―25 |
Investigating Cellular Trajectories in the Severity of COVID-19 and Their Transcriptional Programs Using Machine Learning Approaches |
Hyun-Hwan Jeong, Johnathan Jia, Yulin Dai, Lukas M. Simon, Zhongming Zhao |
| 85 |
[GO] |
2021―Apr―19 |
Protective Role of a TMPRSS2 Variant on Severe COVID-19 Outcome in Young Males and Elderly Women |
Maria Monticelli, Bruno Hay Mele, Elisa Benetti, Chiara Fallerini, Margherita Baldassarri, Simone Furini, Elisa Frullanti, Francesca Mari, Giuseppina Andreotti, Maria Cubellis, Alessandra Renieri |
| 86 |
[GO] |
2021―Apr―13 |
Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants |
Mathieu Gand, Kevin Vanneste, Isabelle Thomas, Steven Van Gucht, Arnaud Capron, Philippe Herman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker |
| 87 |
[GO] |
2021―Apr―06 |
Genotyping of the Major SARS-CoV-2 Clade by Short-Amplicon High-Resolution Melting (SA-HRM) Analysis |
Hector Diaz-Garcia, Ana L. Guzmán-Ortiz, Tania Angeles-Floriano, Israel Parra-Ortega, Briceida López-Martínez, Mirna Martínez-Saucedo, Guillermo Aquino-Jarquin, Rocío Sánchez-Urbina, Hector Quezada, Javier T. Granados-Riveron |
| 88 |
[GO] |
2021―Mar―22 |
A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection |
Livia Perfetto, Elisa Micarelli, Marta Iannuccelli, Prisca Lo Surdo, Giulio Giuliani, Sara Latini, Giusj Monia Pugliese, Giorgia Massacci, Simone Vumbaca, Federica Riccio, Claudia Fuoco, Serena Paoluzi, Luisa Castagnoli, Gianni Cesareni, Luana Licata, Francesca Sacco |
| 89 |
[GO] |
2021―Jan―29 |
Effect of An 84-bp Deletion of the Receptor-Binding Domain on the ACE2 Binding Affinity of the SARS-CoV-2 Spike Protein: An In Silico Analysis |
Gábor Kemenesi, Gábor Endre Tóth, Dávid Bajusz, György M. Keserű, Gabriella Terhes, Katalin Burián, Safia Zeghbib, Balázs A. Somogyi, Ferenc Jakab |
| 90 |
[GO] |
2021―Jan―25 |
Epigenetic Evolution of ACE2 and IL-6 Genes: Non-Canonical Interferon-Stimulated Genes Correlate to COVID-19 Susceptibility in Vertebrates |
Eric R. Sang, Yun Tian, Laura C. Miller, Yongming Sang |
| 91 |
[GO] |
2021―Jan―13 |
Overcoming Supply Shortage for SARS-CoV-2 Detection by RT-qPCR |
Gustavo Barcelos Barra, Ticiane Henriques Santa Rita, Pedro Góes Mesquita, Rafael Henriques Jácomo, Lídia Freire Abdalla Nery |
| 92 |
[GO] |
2020―Dec―30 |
Strong Correlation between the Case Fatality Rate of COVID-19 and the rs6598045 Single Nucleotide Polymorphism (SNP) of the Interferon-Induced Transmembrane Protein 3 (IFITM3) Gene at the Population-Level |
Yong-Chan Kim, Byung-Hoon Jeong |
| 93 |
[GO] |
2020―Dec―25 |
Structural Variability, Expression Profile, and Pharmacogenetic Properties of TMPRSS2 Gene as a Potential Target for COVID-19 Therapy |
Aleksei Zarubin, Vadim Stepanov, Anton Markov, Nikita Kolesnikov, Andrey Marusin, Irina Khitrinskaya, Maria Swarovskaya, Sergey Litvinov, Natalia Ekomasova, Murat Dzhaubermezov, Nadezhda Maksimova, Aitalina Sukhomyasova, Olga Shtygasheva, Elza Khusnutdinova, Magomed Radzhabov, Vladimir Kharkov |
| 94 |
[GO] |
2020―Dec―25 |
Impact of Genetic Variability in ACE2 Expression on the Evolutionary Dynamics of SARS-CoV-2 Spike D614G Mutation |
Szu-Wei Huang, Sorin O. Miller, Chia-Hung Yen, Sheng-Fan Wang |
| 95 |
[GO] |
2020―Dec―01 |
Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease |
Tianyuan Liu, Leandro Balzano-Nogueira, Ana Lleo, Ana Conesa |
| 96 |
[GO] |
2020―Nov―17 |
Computational Analysis of Targeting SARS-CoV-2, Viral Entry Proteins ACE2 and TMPRSS2, and Interferon Genes by Host MicroRNAs |
Jacob B. Pierce, Viorel Simion, Basak Icli, Daniel Pérez-Cremades, Henry S. Cheng, Mark W. Feinberg |
| 97 |
[GO] |
2020―Oct―16 |
Analytical Sensitivity and Specificity of Two RT-qPCR Protocols for SARS-CoV-2 Detection Performed in an Automated Workflow |
Gustavo Barcelos Barra, Ticiane Henriques Santa Rita, Pedro Góes Mesquita, Rafael Henriques Jácomo, Lídia Freire Abdalla Nery |
| 98 |
[GO] |
2020―Sep―04 |
Genetic Hypothesis and Pharmacogenetics Side of Renin-Angiotensin-System in COVID-19 |
Donato Gemmati, Veronica Tisato |
| 99 |
[GO] |
2020―Aug―27 |
COVID-19 and Genetic Variants of Protein Involved in the SARS-CoV-2 Entry into the Host Cells |
Andrea Latini, Emanuele Agolini, Antonio Novelli, Paola Borgiani, Rosalinda Giannini, Paolo Gravina, Andrea Smarrazzo, Mario Dauri, Massimo Andreoni, Paola Rogliani, Sergio Bernardini, Manuela Helmer-Citterich, Michela Biancolella, Giuseppe Novelli |
| 100 |
[GO] |
2020―Aug―26 |
Prediction and Analysis of SARS-CoV-2-Targeting MicroRNA in Human Lung Epithelium |
Jonathan Tak-Sum Chow, Leonardo Salmena |
| 101 |
[GO] |
2020―Aug―18 |
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic |
Sureshnee Pillay, Jennifer Giandhari, Houriiyah Tegally, Eduan Wilkinson, Benjamin Chimukangara, Richard Lessells, Yunus Moosa, Stacey Mattison, Inbal Gazy, Maryam Fish, Lavanya Singh, Khulekani Sedwell Khanyile, James Emmanuel San, Vagner Fonseca, Marta Giovanetti, Luiz Carlos Alcantara, Tulio de Oliveira |
| 102 |
[GO] |
2020―Aug―13 |
Evaluation of the Ion AmpliSeq SARS-CoV-2 Research Panel by Massive Parallel Sequencing |
Federica Alessandrini, Sara Caucci, Valerio Onofri, Filomena Melchionda, Adriano Tagliabracci, Patrizia Bagnarelli, Laura Di Sante, Chiara Turchi, Stefano Menzo |
| 103 |
[GO] |
2020―Aug―11 |
The Characterization of chIFITMs in Avian Coronavirus Infection In Vivo, Ex Vivo and In Vitro |
Angela Steyn, Sarah Keep, Erica Bickerton, Mark Fife |
| 104 |
[GO] |
2020―Jul―22 |
Computational Analysis of the Global Effects of Ly6E in the Immune Response to Coronavirus Infection Using Gene Networks |
Fernando M. Delgado-Chaves, Francisco Gómez-Vela, Federico Divina, Miguel García-Torres, Domingo S. Rodriguez-Baena |
| 105 |
[GO] |
2020―Jul―07 |
Mutation Patterns of Human SARS-CoV-2 and Bat RaTG13 Coronavirus Genomes Are Strongly Biased Towards C>U Transitions, Indicating Rapid Evolution in Their Hosts |
Roman Matyášek, Aleš Kovařík |
| 106 |
[GO] |
2020―Jul―07 |
Protein Coding and Long Noncoding RNA (lncRNA) Transcriptional Landscape in SARS-CoV-2 Infected Bronchial Epithelial Cells Highlight a Role for Interferon and Inflammatory Response |
Radhakrishnan Vishnubalaji, Hibah Shaath, Nehad M. Alajez |
| 107 |
[GO] |
2020―Jul―06 |
Analysis of ACE2 Genetic Variability among Populations Highlights a Possible Link with COVID-19-Related Neurological Complications |
Claudia Strafella, Valerio Caputo, Andrea Termine, Shila Barati, Stefano Gambardella, Paola Borgiani, Carlo Caltagirone, Giuseppe Novelli, Emiliano Giardina, Raffaella Cascella |
| 108 |
[GO] |
2020―Jun―18 |
Rapid Direct Nucleic Acid Amplification Test without RNA Extraction for SARS-CoV-2 Using a Portable PCR Thermocycler |
Soon Keong Wee, Suppiah Paramalingam Sivalingam, Eric Peng Huat Yap |
| 109 |
[GO] |
2020―Jun―15 |
Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract |
Jaewon J. Lee, Scott Kopetz, Eduardo Vilar, John Paul Shen, Ken Chen, Anirban Maitra |
| 110 |
[GO] |
2020―Jun―09 |
Analysis of the Hosts and Transmission Paths of SARS-CoV-2 in the COVID-19 Outbreak |
Rui Dong, Shaojun Pei, Changchuan Yin, Rong Lucy He, Stephen S.-T. Yau |
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