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COVID answers in Scientific Journals all over the world


44 Results       Page 1

 [1] 
Microbiology Society: Microbial Genomics
  original article Date Title Authors   All Authors
1 [GO] 2026―Jan―29 Integration of bioinformatic tools for the detection of SARS-CoV-2 co-infection cases Adeliza Mae L. Realingo, Francisco Gerardo M. Polotan, Miguel Francisco B. Abulencia, Roslind Anne R. Pantoni, Jessel Babe G. Capin, Gerald Ivan Sotelo, et al. (+20)
2 [GO] 2025―Dec―19 Sequencing and variant calling of SARS-CoV-2 from floor swabs: a potential tool for identifying emergent lineages Benazir Hodzic-Santor, Aaron Hinz, Rees Kassen, Ju-Ling Liu, Haig Djambazian, Sally Lee, et al. (+11)
3 [GO] 2025―Oct―30 Genomics reveals multiple introductions of the seventh pandemic Vibrio cholerae O1 El Tor lineage into Iran since 1965 Bita Bakhshi, Elisabeth Njamkepo, Mozhgan Derakhshan-Sefidi, Mohammad R. Pourshafie, Claire Jenkins, Caroline Rouard, François-Xavier Weill
4 [GO] 2025―Sep―11 Genome analysis of Neisseria gonorrhoeae in Norway, 2016-2023, reveals shifting epidemiology in the wake of the COVID-19 pandemic Kristian Alfsnes, Magnus N. Osnes, Hanne Margrethe Gilboe, Vegard Eldholm, Dominique A. Caugant
5 [GO] 2025―Jul―15 Genomic epidemiology of SARS-CoV-2 in Norfolk, UK, March 2020-December 2022 Eleanor H. Hayles, Andrew J. Page, Robert A. Kingsley, Javier Guitian, Gemma C. Langridge
6 [GO] 2025―Jul―15 ‘Vivaldi’: an amplicon-based whole-genome sequencing method for the four seasonal human coronaviruses, 229E, NL63, OC43 and HKU1, alongside SARS-CoV-2 C. Patrick McClure, Theocharis Tsoleridis, Jack D. Hill, Nadine Holmes, Joseph G. Chappell, Timothy Byaruhanga, et al. (+9)
7 [GO] 2025―Jul―10 Enhancing public health surveillance: a comparative study of platform-specific and hybrid assembly approaches in SARS-CoV-2 genome sequencing Yasemin Coşgun, Süleyman Yalçın, Ege Dedeoğlu, Gültekin Ünal, Katharina Kopp, Biran Musul, et al. (+4)
8 [GO] 2025―Mar―17 Human respiratory syncytial virus genetic diversity and lineage replacement in Ireland pre- and post-COVID-19 pandemic Alan Rice, Gabriel Gonzalez, Michael Carr, Jonathan Dean, Emer O’Byrne, Lynn Aarts, et al. (+15)
9 [GO] 2024―Oct―14 The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology Erin E. Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Nithu Sara John, et al. (+60)
10 [GO] 2024―Jul―29 The use of representative community samples to assess SARS-CoV-2 lineage competition: Alpha outcompetes Beta and wild-type in England from January to March 2021 Oliver Eales, Andrew J. Page, Sonja N. Tang, Caroline E. Walters, Haowei Wang, David Haw, et al. (+15)
11 [GO] 2024―May―24 Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data Steven G. Sutcliffe, Susanne A. Kraemer, Isaac Ellmen, Jennifer J. Knapp, Alyssa K. Overton, Delaney Nash, et al. (+28)
12 [GO] 2024―Mar―21 Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover Rodrigo García-López, Blanca Taboada, Selene Zárate, José Esteban Muñoz-Medina, Angel Gustavo Salas-Lais, Alfredo Herrera-Estrella, et al. (+5)
13 [GO] 2024―Feb―15 Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses Nadim Rahman, Colman O'Cathail, Ahmad Zyoud, Alexey Sokolov, Bas Oude Munnink, Björn Grüning, et al. (+41)
14 [GO] 2024―Feb―09 Investigating the rise of Omicron variant through genomic surveillance of SARS-CoV-2 infections in a highly vaccinated university population Ilinca I. Ciubotariu, Rebecca P. Wilkes, Jobin J. Kattoor, Erin N. Christian, Giovanna Carpi, Andrew Kitchen
15 [GO] 2024―Jan―16 Mining genomic repositories to further our knowledge of the extent of SARS-CoV-2 co-infections Daniel Peñas-Utrilla, Patricia Muñóz, Laura Pérez-Lago, Darío García de Viedma
16 [GO] 2023―Dec―20 Spatiotemporal evolution of SARS-CoV-2 in the Bangkok metropolitan region, Thailand, 2020-2022: implications for future outbreak preparedness Pakorn Aiewsakun, Bharkbhoom Jamsai, Worakorn Phumiphanjarphak, Waritta Sawaengdee, Prasit Palittapongarnpim, Surakameth Mahasirimongkol
17 [GO] 2023―Dec―20 Characterization of the RofA regulon in the pandemic M1global and emergent M1UK lineages of Streptococcus pyogenes Xiangyun Zhi, Ana Vieira, Kristin K. Huse, Paulo J. Martel, Ludmila Lobkowicz, Ho Kwong Li, et al. (+4)
18 [GO] 2023―Dec―19 SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico Blanca Itzelt Taboada, Selene Zárate, Rodrigo García-López, José Esteban Muñoz-Medina, Bruno Gómez-Gil, Alfredo Herrera-Estrella, et al. (+9)
19 [GO] 2023―Nov―29 Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance Sara E. Zufan, Katherine A. Lau, Angela Donald, Tuyet Hoang, Charles S. P. Foster, Chisha Sikazwe, et al. (+7)
20 [GO] 2023―Aug―31 The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia Ashleigh F. Porter, Leo Featherstone, Courtney R. Lane, Norelle L. Sherry, Monica L. Nolan, David Lister, et al. (+3)
21 [GO] 2023―Jun―02 Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California’s SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet Emily A. Smith, Kevin G. Libuit, Curtis J. Kapsak, Michelle R. Scribner, Sage M. Wright, John Bell, et al. (+9)
22 [GO] 2023―May―18 Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing Cecilia Salazar, Ignacio Ferrés, Mercedes Paz, Alicia Costábile, Gonzalo Moratorio, Pilar Moreno, Gregorio Iraola
23 [GO] 2023―Apr―21 Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage-defining mutations Fatima R. Ulhuq, Madhuri Barge, Kerry Falconer, Jonathan Wild, Goncalo Fernandes, Abbie Gallagher, et al. (+8)
24 [GO] 2023―Apr―19 Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples Irene Bassano, Vinoy K. Ramachandran, Mohammad S. Khalifa, Chris J. Lilley, Mathew R. Brown, Ronny van Aerle, et al. (+14)
25 [GO] 2023―Apr―13 Novel recombinant SARS-CoV-2 lineage detected through genomic surveillance in Wales, UK Nicole Pacchiarini, Michelle Cronin, Clare Sawyer, Catie Williams, Andrew Beazer, Simon Cottrell, et al. (+5)
26 [GO] 2023―Apr―06 Increased clonality among Neisseria gonorrhoeae isolates during the COVID-19 pandemic in Amsterdam, the Netherlands H.C.A. Zondag, J. de Korne-Elenbaas, S.M. Bruisten, H.J.C. de Vries, A.P. van Dam
27 [GO] 2023―Mar―31 Genomic surveillance identifies SARS-CoV-2 transmission patterns in local university populations, Wisconsin, USA, 2020-2022 Arunachalam Ramaiah, Manjeet Khubbar, Amy Bauer, Samantha Scott, Jennifer Lentz, Katherine Akinyemi, et al. (+4)
28 [GO] 2023―Feb―23 Upper respiratory tract microbiota dynamics following COVID-19 in adults Christian Rosas-Salazar, Kyle S. Kimura, Meghan H. Shilts, Britton A. Strickland, Michael H. Freeman, Bronson C. Wessinger, et al. (+6)
29 [GO] 2022―Nov―16 Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain Oliver J. Charity, Luke Acton, Matt Bawn, Eleonora Tassinari, Gaёtan Thilliez, Marie A. Chattaway, et al. (+3)
30 [GO] 2022―Sep―15 Phylodynamic analysis of SARS-CoV-2 spread in Rio de Janeiro, Brazil, highlights how metropolitan areas act as dispersal hubs for new variants Alessandra Pavan Lamarca, Luiz G. P. de Almeida, Ronaldo da Silva Francisco, Liliane Cavalcante, Otávio Brustolini, Alexandra L. Gerber, et al. (+17)
31 [GO] 2022―Jul―25 Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021 Georgi Merhi, Alexander J. Trotter, Leonardo de Oliveira Martins, Jad Koweyes, Thanh Le-Viet, Hala Abou Naja, et al. (+20)
32 [GO] 2022―Mar―17 Unusual SARS-CoV-2 intrahost diversity reveals lineage superinfection Filipe Zimmer Dezordi, Paola Cristina Resende, Felipe Gomes Naveca, Valdinete Alves do Nascimento, Victor Costa de Souza, Anna Carolina Dias Paixão, et al. (+25)
33 [GO] 2022―Mar―16 Targeted Sanger sequencing to recover key mutations in SARS-CoV-2 variant genome assemblies produced by next-generation sequencing Lavanya Singh, James E. San, Houriiyah Tegally, Pius M. Brzoska, Ugochukwu J. Anyaneji, Eduan Wilkinson, et al. (+8)
34 [GO] 2022―Jan―31 Applied Bioinformatics and Public Health Microbiology: challenges, discoveries and innovations during a pandemic Edward Cunningham-Oakes, Hannah Trivett
35 [GO] 2021―Dec―14 Genomic insights into the circulation of pandemic fluoroquinolone-resistant extra-intestinal pathogenic Escherichia coli ST1193 in Vietnam Quynh Nguyen, To Thi Nguyen Nguyen, Phuong Pham, Vinh Chau, Lan Phu Huong Nguyen, Toan Duc Nguyen, et al. (+7)
36 [GO] 2021―Dec―06 SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity Pakorn Aiewsakun, Patrawee Nilplub, Patompon Wongtrakoongate, Suradej Hongeng, Arunee Thitithanyanont
37 [GO] 2021―Nov―30 Phylogenomics and population genomics of SARS-CoV-2 in Mexico during the pre-vaccination stage reveals variants of interest B.1.1.28.4 and B.1.1.222 or B.1.1.519 and the nucleocapsid mutation S194L associated with symptoms Francisco Barona-Gómez, Luis Delaye, Erik Díaz-Valenzuela, Fabien Plisson, Arely Cruz-Pérez, Mauricio Díaz-Sánchez, et al. (+10)
38 [GO] 2021―Nov―30 SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021 Muhammad Bilal Sarwar, Muhammad Yasir, Nabil-Fareed Alikhan, Nadeem Afzal, Leonardo de Oliveira Martins, Thanh Le Viet, et al. (+14)
39 [GO] 2021―Nov―03 Insights on the SARS-CoV-2 genome variability: the lesson learned in Brazil and its impacts on the future of pandemics Victória Riquena Grosche, Igor Andrade Santos, Giulia Magalhães Ferreira, João Victor Rodrigues Dutra, Larissa Catharina Costa, Nilson Nicolau-Junior, et al. (+3)
40 [GO] 2021―Jun―29 Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management Andrew J. Page, Alison E. Mather, Thanh Le-Viet, Emma J. Meader, Nabil-Fareed Alikhan, Gemma L. Kay, et al. (+36)
41 [GO] 2021―Jun―22 Genomic epidemiology of the first epidemic wave of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Palestine Nouar Qutob, Zaidoun Salah, Damien Richard, Hisham Darwish, Husam Sallam, Issa Shtayeh, et al. (+5)
42 [GO] 2021―Jun―15 Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection Matthew J. Dorman, Nicholas R. Thomson, Josefina Campos
43 [GO] 2020―Oct―28 Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone Eleonora Tassinari, Matt Bawn, Gaetan Thilliez, Oliver Charity, Luke Acton, Mark Kirkwood, et al. (+6)
44 [GO] 2020―Jun―18 Dynamic linkage of COVID-19 test results between Public Health England’s Second Generation Surveillance System and UK Biobank Jacob Armstrong, Justine K. Rudkin, Naomi Allen, Derrick W. Crook, Daniel J. Wilson, David H. Wyllie, Anne Marie O’Connell
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44 Results       Page 1


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